Whole genome analysis for QTL/association enrichment
Running...
Version: Enrich S: beta v0.8
Data:
Number of digestive system traits:
13
Number of QTL / associations found:
225
Number of chromosomes where QTL / associations are found:
28
Chi-squared (χ2) test: are digestive system traits over-represented on some chromosomes?
Chromosomes
Total χ2
df
p-values
FDR *
Size of χ2
Chromosome Z
1.73537
27
0.998329325823115
9.999886e-01
Chromosome 1
11955.14879
27
9e-41
1.260000e-39
Chromosome 2
14.21537
27
0.979062
9.999886e-01
Chromosome 3
6.70423
27
0.9999758
9.999886e-01
Chromosome 4
711.01537
27
1.874788e-132
5.249406e-131
Chromosome 5
41.02423
27
0.04096556
6.747269e-02
Chromosome 6
80.08208
27
3.66976e-07
1.467904e-06
Chromosome 7
6.24208
27
0.9999886
9.999886e-01
Chromosome 8
58.93537
27
0.0003631225
1.016743e-03
Chromosome 9
80.08208
27
3.66976e-07
1.467904e-06
Chromosome 10
41.02423
27
0.04096556
6.747269e-02
Chromosome 11
41.02423
27
0.04096556
6.747269e-02
Chromosome 12
41.02423
27
0.04096556
6.747269e-02
Chromosome 14
26.34879
27
0.4993143
6.990400e-01
Chromosome 15
58.93537
27
0.0003631225
1.016743e-03
Chromosome 16
41.02423
27
0.04096556
6.747269e-02
Chromosome 18
0.00208
27
0.998329325823115
9.999886e-01
Chromosome 19
14.90879
27
0.9706918
9.999886e-01
Chromosome 20
58.93537
27
0.0003631225
1.016743e-03
Chromosome 21
26.34879
27
0.4993143
6.990400e-01
Chromosome 22
14.90879
27
0.9706918
9.999886e-01
Chromosome 23
80.08208
27
3.66976e-07
1.467904e-06
Chromosome 24
80.08208
27
3.66976e-07
1.467904e-06
Chromosome 25
41.02423
27
0.04096556
6.747269e-02
Chromosome 26
6.70423
27
0.9999758
9.999886e-01
Chromosome 27
26.34879
27
0.4993143
6.990400e-01
Chromosome 28
41.02423
27
0.04096556
6.747269e-02
Chromosome 33
80.08208
27
3.66976e-07
1.467904e-06
Chi-squared (χ2) test: Which of the 13 digestive system traits are over-represented in the QTLdb
Traits
Total χ2
df
p-values
FDR *
Size of χ2
Duodenum length
43.10715
12
2.165565e-05
4.021764e-05
Duodenum weight
69.40728
12
4.134063e-10
1.791427e-09
Gizzard percentage
96.14262
12
3.160303e-15
4.108394e-14
Gizzard weight
27.90242
12
0.00571676
6.756171e-03
Ileum length
59.05992
12
3.347424e-08
1.087913e-07
Ileum weight
41.46418
12
4.097425e-05
6.658316e-05
Intestine length
51.2158
12
8.532724e-07
2.218508e-06
Intestine weight/length ratio
46.75004
12
5.149869e-06
1.115805e-05
Jejunum length
38.51891
12
0.0001262623
1.823789e-04
Jejunum weight
73.00004
12
8.759311e-11
5.693552e-10
Pancreas weight
20.90426
12
0.05180011
5.180011e-02
Proventriculus weight
26.49053
12
0.009142203
9.904053e-03
Small intestine length
32.71428
12
0.001072505
1.394257e-03
Correlations found between some of these traits for your reference
No correlation data found on these traits
Overall Test
Data
Chi'Square Test
Fisher's Exact Test
Number of chrom.:
28
χ2
=
13675.017590
Number of traits:
13
df
=
324
Number of QTLs:
225
p-value
=
0
FOOT NOTE: * : FDR is short for "false
discovery rate", representing the expected proportion of type I errors. A type I
error is where you incorrectly reject the null hypothesis, i.e. you get a false
positive. It's statistical definition is FDR = E(V/R | R > 0) P(R > 0), where
V = Number of Type I errors (false positives); R = Number of rejected hypotheses.
Benjamini–Hochberg procedure is a practical way to estimate FDR.
Running...
