A Wish List of Genes for Annotation (version 3.26)

(Matches to BACs by their Genome Locations Based on Pig Genome Build v.9 (Data Downloads as of Mar. 7, 2010 )
Info: HINTS:
  ( Go to genes whose symbol start with: 1, 5, 7, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z )
 Records 2201 - 2300:
Show Finished BAC Show unFinished BAC
User Gene List Genome Location
(Chr.:start-end)
 Fell within Finished BACs
(Contig, BACname, Chr.:Start-End)
 Fell within Unfinished Clones
(SeqName, Chr.:Start-End)
Symbol Owner/ Status Ensembl Gene ID
CCDC90A   ENSSSCG00000001057 7:10324292-10347927   CT841709,CH242-326P18,7:10261819-10389345
(Clone quality: bE326P18 on chr=7; Num_of_Contigs=2; )
CCDC90B   ENSSSCG00000014903 9:17524545-17554787   FP236281,CH242-190O9,9:17468362-17575805
(Clone quality: bE190O9 on chr=9; Num_of_Contigs=3; )
CCDC91 ENSSSCG00000000543 5:43791366-43941193    
CCDC92   ENSSSCG00000009764 14:29178409-29193158   CU638677,CH242-254G23,14:29172666-29298652
(Clone quality: bE254G23 on chr=14; Num_of_Contigs=4; )
CCDC93   ENSSSCG00000015714 15:22189570-22286415 CU406995,CH242-505D21,15:22112976-22359365
(Clone quality: bE505D21 on chr=15; Num_of_Contigs=4; ) 		 
CCDC94   ENSSSCG00000013499 2:48423562-48439927   CU929466,CH242-60A20,2:48379010-48440195
(Clone quality: bE60A20 on chr=2; Num_of_Contigs=5; )
CCDC97   ENSSSCG00000003016 6:34081896-34089206   FP236582,CH242-238L13,6:34079127-34089697
(Clone quality: bE238L13 on chr=6; Num_of_Contigs=11; )
CCDC99   ENSSSCG00000017011 16:51573495-51592490    
CCHCR1 ENSSSCG00000001391 7:27501724-27514557 CT737281,CH242-102G9,7:27394698-27581746
(Clone quality: bE102G9 on chr=7; Num_of_Contigs=3; ) 		 
CCIN ENSSSCG00000005340 1:248111390-248113156   CU633506,CH242-257H11,1:248107578-248115549
(Clone quality: bE257H11 on chr=1; Num_of_Contigs=8; )
CCK ENSSSCG00000001660 7:44023413-44051991    
CCK ENSSSCG00000011277 13:21632786-21637965    
CCK ENSSSCG00000014631 9:2721407-2831787    
CCKBR   ENSSSCG00000014631 9:2721407-2831787    
CCL1 ENSSSCG00000017720 12:38293074-38296197   CU928660,CH242-280M5,12:38285912-38302748
(Clone quality: bE280M5 on chr=12; Num_of_Contigs=19; )
CCL11 ENSSSCG00000017722 12:38323663-38326296    
CCL14 ENSSSCG00000017703 12:37379355-37380010   CU929934,CH242-43L9,12:37376518-37382841
(Clone quality: bE43L9 on chr=12; Num_of_Contigs=3; )
CCL16 ENSSSCG00000017704 12:37382438-37385815    
CCL19 ENSSSCG00000010966 10:30554414-30557010   FP236727,CH242-511I17,10:30551839-30567954
(Clone quality: bE511I17 on chr=10; Num_of_Contigs=7; )
CCL2 ENSSSCG00000017723 12:38372460-38374364    
CCL20 ENSSSCG00000016254 15:121877745-121880971   CU861588,CH242-174G17,15:121858065-121882478
(Clone quality: bE174G17 on chr=15; Num_of_Contigs=11; )
CCL21 ENSSSCG00000010965 10:30537652-30538765   FP236727,CH242-511I17,10:30537395-30548503
(Clone quality: bE511I17 on chr=10; Num_of_Contigs=7; )
CCL22 ENSSSCG00000002821 6:20120622-20125581   FP102873,CH242-277I7,6:20115234-20170472
(Clone quality: bE277I7 on chr=6; Num_of_Contigs=4; )
CCL24 ENSSSCG00000007699 3:8750352-8750749   CU855597,CH242-327P3,3:8749498-8751811
(Clone quality: bE327P3 on chr=3; Num_of_Contigs=27; )
CCL25 ENSSSCG00000013593 2:51407278-51410741   CU929699,CH242-182L23,2:51289316-51437705
(Clone quality: bE182L23 on chr=2; Num_of_Contigs=2; )
CCL26 ENSSSCG00000007697 3:8642289-8643021   CU855597,CH242-327P3,3:8640694-8644150
(Clone quality: bE327P3 on chr=3; Num_of_Contigs=27; )
CCL27 ENSSSCG00000010967 10:30582407-30583155   CU928717,CH242-142N10,10:30573702-30613538
(Clone quality: bE142N10 on chr=10; Num_of_Contigs=7; )
CCL28 ENSSSCG00000016871 16:25072581-25094252    
CCL3L1 ENSSSCG00000017700 12:37256341-37258243   CU929934,CH242-43L9,12:37209174-37292498
(Clone quality: bE43L9 on chr=12; Num_of_Contigs=3; )
CCL4 ENSSSCG00000017698 12:37243337-37245115   CU929934,CH242-43L9,12:37209174-37292498
(Clone quality: bE43L9 on chr=12; Num_of_Contigs=3; )
CCL4L1 ENSSSCG00000017698 12:37243337-37245115   CU929934,CH242-43L9,12:37209174-37292498
(Clone quality: bE43L9 on chr=12; Num_of_Contigs=3; )
CCL5 ENSSSCG00000017705 12:37417187-37423594   CU896616,CH242-206O9,12:37393181-37445015
(Clone quality: bE206O9 on chr=12; Num_of_Contigs=7; )
CCL8 ENSSSCG00000017721 12:38305186-38307206   CU928660,CH242-280M5,12:38302849-38308872
(Clone quality: bE280M5 on chr=12; Num_of_Contigs=19; )
CCM2   ENSSSCG00000016734 18:48859697-49002419    
CCNA1 ENSSSCG00000009354 11:11866211-11875399   CU468057,CH242-192D12,11:11865999-11902535
(Clone quality: bE192D12 on chr=11; Num_of_Contigs=10; )
CCNA2   ENSSSCG00000009094 8:87776929-87787050    
CCNB1IP1   ENSSSCG00000002144 7:85008453-85013405   CU571042,CH242-348N17,7:84913444-85061275
(Clone quality: bE348N17 on chr=7; Num_of_Contigs=2; )
CCNB2 ENSSSCG00000004588 1:116791570-116827208    
CCNB3   ENSSSCG00000012307 X:43248153-43300124    
CCNC ENSSSCG00000004353 1:69833873-69858465    
CCND1 ENSSSCG00000012873 2:1812441-1856137    
CCND2   ENSSSCG00000000727 5:61964529-61981790    
CCND3 ENSSSCG00000001632 7:42666183-42670750    
CCNDBP1 ENSSSCG00000004715 1:134408447-134410799   CU041269,CH242-35N12,1:134381341-134411075
(Clone quality: bE35N12 on chr=1; Num_of_Contigs=12; )
CCNE1 ENSSSCG00000002855 6:27008842-27020592    
CCNE2 ENSSSCG00000006095 4:42150042-42165730   FP085498,CH242-18C1,4:42141953-42219837
(Clone quality: bE18C1 on chr=4; Num_of_Contigs=5; )
CCNG1   ENSSSCG00000017024 16:57843248-57850733   CU694497,CH242-321D12,16:57793714-57884951
(Clone quality: bE321D12 on chr=16; Num_of_Contigs=4; )
CCNG2 ENSSSCG00000008988 8:62239553-62247659   CU915443,CH242-113L13,8:62194257-62263835
(Clone quality: bE113L13 on chr=8; Num_of_Contigs=5; )
CCNH   ENSSSCG00000014147 2:84500823-84534672   CU855959,CH242-123E22,2:84454292-84608873
(Clone quality: bE123E22 on chr=2; Num_of_Contigs=1; )
CCNI   ENSSSCG00000008987 8:62137206-62168764    
CCNI2   ENSSSCG00000014284 2:122984190-122989315 CU468216,CH242-85C7,2:122831928-123020434
(Clone quality: bE85C7 on chr=2; Num_of_Contigs=1; ) 		 
CCNJ   ENSSSCG00000010502 14:112578014-112596356   CT827825,CH242-216D24,14:112519668-112654753
(Clone quality: bE216D24 on chr=14; Num_of_Contigs=2; )
CCNJL   ENSSSCG00000017036 16:60825530-60851664   CU571129,CH242-2E15,16:60798351-60893351
(Clone quality: bE2E15 on chr=16; Num_of_Contigs=4; )
CCNK   ENSSSCG00000002509 7:129770656-129796927    
CCNL2   ENSSSCG00000003354 6:43108898-43111282   FP102593,CH242-171J19,6:43108228-43113471
(Clone quality: bE171J19 on chr=6; Num_of_Contigs=11; )
CCNT1   ENSSSCG00000000173 5:13278670-13312392   CU914692,CH242-143P14,5:13271941-13360701
(Clone quality: bE143P14 on chr=5; Num_of_Contigs=6; )
CCNT2   ENSSSCG00000015697 15:15242559-15285410    
CCNY   ENSSSCG00000011107 10:54987099-55021425    
CCPG1 ENSSSCG00000004610 1:121174750-121224334    
CCR1 ENSSSCG00000011322 13:24637939-24644546    
CCR10 ENSSSCG00000011289 13:22127196-22128347   CU466505,CH242-515M14,13:22123386-22182273
(Clone quality: bE515M14 on chr=13; Num_of_Contigs=3; )
CCR10 ENSSSCG00000017392 12:17720943-17722854   CU928483,CH242-17I6,12:17706452-17731169
(Clone quality: bE17I6 on chr=12; Num_of_Contigs=8; )
CCR4 ENSSSCG00000000502 5:33183472-33417601    
CCR4 ENSSSCG00000002799 6:19251945-19325733    
CCR7 ENSSSCG00000017466 12:19577558-19589498   CU856162,CH242-340B15,12:19576351-19592423
(Clone quality: bE340B15 on chr=12; Num_of_Contigs=24; )
CCR9 ENSSSCG00000011289 13:22127196-22128347   CU466505,CH242-515M14,13:22123386-22182273
(Clone quality: bE515M14 on chr=13; Num_of_Contigs=3; )
CCR9 ENSSSCG00000011316 13:24444364-24462037   CU469254,CH242-75A24,13:24398824-24519472
(Clone quality: bE75A24 on chr=13; Num_of_Contigs=4; )
CCRL1 ENSSSCG00000011630 13:60583954-60589111   CU463338,CH242-512O15,13:60561420-60652606
(Clone quality: bE512O15 on chr=13; Num_of_Contigs=4; )
CCS   ENSSSCG00000012934 2:4121849-4163669    
CCT2   ENSSSCG00000000496 5:32702669-32717722    
CCT3   ENSSSCG00000006487 4:97601379-97656994    
CCT4   ENSSSCG00000008377 3:73478929-73496364    
CCT7   ENSSSCG00000008303 3:63887995-63907404    
CD100 ENSSSCG00000009584 14:1167125-1208885   CU469368,CH242-181M10,14:1134838-1275802
(Clone quality: bE181M10 on chr=14; Num_of_Contigs=3; )
CD101 ENSSSCG00000006734 4:107816226-107847307   CU468873,CH242-284J24,4:107815328-107859077
(Clone quality: bE284J24 on chr=4; Num_of_Contigs=15; )
CD103 ENSSSCG00000017869 12:47092987-47136476    
CD104 ENSSSCG00000017204 12:4001967-4036159    
CD105 ENSSSCG00000005625 1:282803569-282837580    
CD107b ENSSSCG00000012604 X:95827889-95864680    
CD109 ENSSSCG00000004485 1:97276232-97430354    
CD110 ENSSSCG00000003947 6:120231429-120237080   CU694684,CH242-210N13,6:120225876-120239718
(Clone quality: bE210N13 on chr=6; Num_of_Contigs=11; )
CD111 ENSSSCG00000015124 9:45499515-45554433    
CD113 ENSSSCG00000011933 13:111141197-111166125   CU914400,CH242-126E9,13:111116261-111220774
(Clone quality: bE126E9 on chr=13; Num_of_Contigs=5; )
CD115 ENSSSCG00000014441 2:136526706-136552808    
CD117 ENSSSCG00000008842 8:35758931-35827981    
CD119 ENSSSCG00000004156 1:28492000-28512144   CU302366,CH242-266L9,1:28341732-28512176
(Clone quality: bE266L9 on chr=1; Num_of_Contigs=1; )
CD11a ENSSSCG00000007797 3:16488603-16527995    
CD120a ENSSSCG00000000708 5:60337243-60349834    
CD121a ENSSSCG00000008162 3:47896450-47909993   CU856003,CH242-200C14,3:47889549-47912820
(Clone quality: bE200C14 on chr=3; Num_of_Contigs=5; )
CD121b ENSSSCG00000008163 3:48048433-48111836    
CD124 ENSSSCG00000007817 3:17689919-17711751    
CD127 ENSSSCG00000016832 16:18632640-18662644   CU463889,CH242-401A5,16:18594462-18700254
(Clone quality: bE401A5 on chr=16; Num_of_Contigs=7; )
CD129 ENSSSCG00000007973 3:35184957-35192998   FP103025,CH242-371L21,3:35180882-35196238
(No clone quality info on )
CD13 ENSSSCG00000001849 7:60775665-60790582   CT737411,CH242-149F11,7:60738915-60829656
(Clone quality: bE149F11 on chr=7; Num_of_Contigs=3; )
CD131 ENSSSCG00000000136 5:7187547-7201962   CU407327,CH242-127L5,5:7172124-7252136
(Clone quality: bE127L5 on chr=5; Num_of_Contigs=4; )
CD134 ENSSSCG00000003331 6:42795165-42797753   FP102596,CH242-173K23,6:42793613-42821104
(Clone quality: bE173K23 on chr=6; Num_of_Contigs=10; )
CD135 ENSSSCG00000009314 11:4780073-4815356    
CD137 ENSSSCG00000003386 6:46287255-46302434    
CD138 ENSSSCG00000008601 3:109603804-109608153   CU856117,CH242-479B3,3:109586437-109610385
(Clone quality: bE479B3 on chr=3; Num_of_Contigs=16; )
CD140a ENSSSCG00000008841 8:35262065-35303473    
Go to records:
1-100

Report problems to zhuiastate.edu $version: 3.26; Updates: Mar. 6, 2010; Apr. 20, 2010; Aug 21, 2010
Related publications:
Martien Groenen, Alan Archibald, Hirohide Uenishi, Christopher Tuggle, Yasuhiro Takeuchi, Max Rothschild, Claire Rogel-Gaillard, ... Denis Milan, Hendrik-Jan Megens, ... Zhi-Liang Hu, Sean J. Humphray, ... James M. Reecy, ..., Gary A. Rohrer, ... Shuhong Zhao, Jane Rogers, Carol Churcher & Lawrence B. Schook. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491, 393-398 (15 November 2012).

 

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